IL_8UZG_082

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUU*AAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UZG_082 not in the Motif Atlas

Geometric match to IL_8FER_001

Geometric discrepancy: 0.3249

The information below is about IL_8FER_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8UZG|1|1|C|2103
8UZG|1|1|C|2104
8UZG|1|1|U|2105
8UZG|1|1|U|2106
*
8UZG|1|1|A|2183
8UZG|1|1|A|2184
8UZG|1|1|U|2185
8UZG|1|1|G|2186

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L1

Chain p

30S ribosomal protein S11