IL_8UZG_131

3D structure

PDB id

8UZG (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8UZG|1|2|A|532, 8UZG|1|2|U|534, 8UZG|1|2|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8UZG_131 not in the Motif Atlas

Geometric match to IL_4LFB_021

Geometric discrepancy: 0.3141

The information below is about IL_4LFB_021

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_52042.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8UZG|1|2|G|515
8UZG|1|2|U|516
8UZG|1|2|G|517
8UZG|1|2|C|518
8UZG|1|2|C|519
8UZG|1|2|A|520
8UZG|1|2|G|521
*
8UZG|1|2|C|528
8UZG|1|2|G|529
8UZG|1|2|G|530
8UZG|1|2|U|531
8UZG|1|2|A|532
8UZG|1|2|A|533
8UZG|1|2|U|534
8UZG|1|2|A|535
8UZG|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S3

Chain i

30S ribosomal protein S4

Chain q

30S ribosomal protein S12