IL_8V03_083

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCCUU*AAUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_083 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3344

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8V03|1|1|G|2102
8V03|1|1|C|2103
8V03|1|1|C|2104
8V03|1|1|U|2105
8V03|1|1|U|2106
*
8V03|1|1|A|2183
8V03|1|1|A|2184
8V03|1|1|U|2185
8V03|1|1|G|2186
8V03|1|1|U|2187

Current chains

Chain 1

23S ribosomal RNA

Nearby chains