IL_8V03_136

3D structure

PDB id

8V03 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

8V03|1|2|A|532, 8V03|1|2|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V03_136 not in the Motif Atlas

Geometric match to IL_8CRE_423

Geometric discrepancy: 0.2816

The information below is about IL_8CRE_423

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54177.4

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8V03|1|2|G|515
8V03|1|2|U|516
8V03|1|2|G|517
8V03|1|2|C|518
8V03|1|2|C|519
8V03|1|2|A|520
8V03|1|2|G|521
*
8V03|1|2|C|528
8V03|1|2|G|529
8V03|1|2|G|530
8V03|1|2|U|531
8V03|1|2|A|532
8V03|1|2|A|533
8V03|1|2|U|534
8V03|1|2|A|535
8V03|1|2|C|536

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS3

Chain i

30S ribosomal protein S4

Chain q

Small ribosomal subunit protein uS12