IL_8V83_017

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

8V83|1|1|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_017 not in the Motif Atlas

Geometric match to IL_7RQB_008

Geometric discrepancy: 0.3943

The information below is about IL_7RQB_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

8V83|1|1|C|462
8V83|1|1|C|463
*
8V83|1|1|G|466
8V83|1|1|U|467
8V83|1|1|G|468

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A

Chain R

Protein MAK16

Chain w

Ribosomal RNA-processing protein 1