IL_8V83_019

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GGAUAAAUC*GGAAUAC

Length

16 nucleotides

Bulged bases

8V83|1|1|A|519, 8V83|1|1|U|520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_019 not in the Motif Atlas

Geometric match to IL_5TBW_019

Geometric discrepancy: 0.1157

The information below is about IL_5TBW_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74024.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

8V83|1|1|G|517
8V83|1|1|G|518
8V83|1|1|A|519
8V83|1|1|U|520
8V83|1|1|A|521
8V83|1|1|A|522
8V83|1|1|A|523
8V83|1|1|U|524
8V83|1|1|C|525
*
8V83|1|1|G|567
8V83|1|1|G|568
8V83|1|1|A|569
8V83|1|1|A|570
8V83|1|1|U|571
8V83|1|1|A|572
8V83|1|1|C|573

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain F

60S ribosomal protein L7-A

Chain M

60S ribosomal protein L14-A

Chain S

Large ribosomal subunit protein eL20A