IL_8V83_038

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8V83|1|1|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_038 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.202

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

8V83|1|1|G|1207
8V83|1|1|U|1208
8V83|1|1|G|1209
*
8V83|1|1|C|1296
8V83|1|1|C|1297

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein uL6A

Chain S

Large ribosomal subunit protein eL20A

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2