IL_8V83_043

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

8V83|1|1|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_043 not in the Motif Atlas

Geometric match to IL_5TBW_058

Geometric discrepancy: 0.1663

The information below is about IL_5TBW_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8V83|1|1|C|1385
8V83|1|1|A|1386
8V83|1|1|G|1387
*
8V83|1|1|C|1420
8V83|1|1|G|1421

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain R

Protein MAK16

Chain e

60S ribosomal protein L32