3D structure

PDB id
8V83 (explore in PDB, NAKB, or RNA 3D Hub)
Description
60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.53 Å

Loop

Sequence
UUG*CCA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V83_052 not in the Motif Atlas
Geometric match to IL_4E59_001
Geometric discrepancy: 0.1401
The information below is about IL_4E59_001
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8V83|1|1|U|2410
8V83|1|1|U|2411
8V83|1|1|G|2412
*
8V83|1|1|C|2809
8V83|1|1|C|2810
8V83|1|1|A|2811

Current chains

Chain 1
Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain J
rRNA-processing protein EBP2
Chain l
60S ribosome subunit biogenesis protein NIP7
Chain r
Ribosome biogenesis protein NSA2

Coloring options:


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