IL_8V83_083

3D structure

PDB id

8V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8V83|1|1|A|3376, 8V83|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V83_083 not in the Motif Atlas

Geometric match to IL_4PKD_001

Geometric discrepancy: 0.1918

The information below is about IL_4PKD_001

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8V83|1|1|G|3328
8V83|1|1|U|3329
8V83|1|1|A|3330
*
8V83|1|1|U|3373
8V83|1|1|U|3374
8V83|1|1|A|3375
8V83|1|1|A|3376
8V83|1|1|G|3377
8V83|1|1|C|3378

Current chains

Chain 1

Saccharomyces cerevisiae S288C 25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Z

Ribosome biogenesis protein SSF1

Chain u

Ribosome biogenesis protein RLP24