IL_8V83_090
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- UGG*CA
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V83_090 not in the Motif Atlas
- Geometric match to IL_4V9F_081
- Geometric discrepancy: 0.3644
- The information below is about IL_4V9F_081
- Detailed Annotation
- Single stack bend
- Broad Annotation
- No text annotation
- Motif group
- IL_26793.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 16
Unit IDs
8V83|1|2|U|122
8V83|1|2|G|123
8V83|1|2|G|124
*
8V83|1|2|C|130
8V83|1|2|A|131
Current chains
- Chain 2
- Saccharomyces cerevisiae S288C 5.8S ribosomal RNA
Nearby chains
- Chain n
- Pescadillo homolog
Coloring options: