IL_8V83_098
3D structure
- PDB id
- 8V83 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GCAGUAGAGUAGCC*GUUGUUACGAUCUGC
- Length
- 29 nucleotides
- Bulged bases
- 8V83|1|1|U|3341, 8V83|1|1|U|3354, 8V83|1|1|U|3355, 8V83|1|1|G|3366
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8V83|1|1|G|3337
8V83|1|1|C|3338
8V83|1|1|A|3339
8V83|1|1|G|3340
8V83|1|1|U|3341
8V83|1|1|A|3342
8V83|1|1|G|3343
8V83|1|1|A|3344
8V83|1|1|G|3345
8V83|1|1|U|3346
8V83|1|1|A|3347
8V83|1|1|G|3348
8V83|1|1|C|3349
8V83|1|1|C|3350
*
8V83|1|1|G|3353
8V83|1|1|U|3354
8V83|1|1|U|3355
8V83|1|1|G|3356
8V83|1|1|U|3357
8V83|1|1|U|3358
8V83|1|1|A|3359
8V83|1|1|C|3360
8V83|1|1|G|3361
8V83|1|1|A|3362
8V83|1|1|U|3363
8V83|1|1|C|3364
8V83|1|1|U|3365
8V83|1|1|G|3366
8V83|1|1|C|3367
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain Z
- Ribosome biogenesis protein SSF1
- Chain u
- Ribosome biogenesis protein RLP24
Coloring options: