IL_8V84_001
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8V84|1|2|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_001 not in the Motif Atlas
- Geometric match to IL_1DQF_001
- Geometric discrepancy: 0.1893
- The information below is about IL_1DQF_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8V84|1|1|C|7
8V84|1|1|C|8
*
8V84|1|2|G|150
8V84|1|2|C|151
8V84|1|2|G|152
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
- Chain 2
- Saccharomyces cerevisiae 5.8S ribosomal RNA
Nearby chains
- Chain G
- Large ribosomal subunit protein eL8A
- Chain N
- Large ribosomal subunit protein eL15A
- Chain n
- Pescadillo homolog
Coloring options: