IL_8V84_035
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 8V84|1|1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_035 not in the Motif Atlas
- Geometric match to IL_7A0S_035
- Geometric discrepancy: 0.1284
- The information below is about IL_7A0S_035
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
8V84|1|1|A|1180
8V84|1|1|U|1181
8V84|1|1|A|1182
*
8V84|1|1|U|1324
8V84|1|1|U|1325
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- Large ribosomal subunit protein uL13A
- Chain S
- Large ribosomal subunit protein eL20A
- Chain f
- 60S ribosomal protein L33-A
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