IL_8V84_039
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UCUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8V84|1|1|A|1221
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_039 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2545
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8V84|1|1|U|1218
8V84|1|1|C|1219
8V84|1|1|U|1220
8V84|1|1|A|1221
8V84|1|1|G|1222
8V84|1|1|A|1223
8V84|1|1|C|1224
8V84|1|1|A|1225
8V84|1|1|G|1226
*
8V84|1|1|C|1283
8V84|1|1|C|1284
8V84|1|1|G|1285
8V84|1|1|A|1286
8V84|1|1|A|1287
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain S
- Large ribosomal subunit protein eL20A
- Chain W
- Ribosome assembly factor MRT4
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