IL_8V84_040
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8V84|1|1|G|1236
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_040 not in the Motif Atlas
- Geometric match to IL_4V9F_043
- Geometric discrepancy: 0.2411
- The information below is about IL_4V9F_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8V84|1|1|G|1234
8V84|1|1|U|1235
8V84|1|1|G|1236
8V84|1|1|G|1237
8V84|1|1|C|1238
*
8V84|1|1|G|1250
8V84|1|1|A|1251
8V84|1|1|A|1252
8V84|1|1|U|1253
8V84|1|1|C|1254
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain W
- Ribosome assembly factor MRT4
- Chain r
- Ribosome biogenesis protein NSA2
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