IL_8V84_064
3D structure
- PDB id
- 8V84 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGUAGAAUAAG*CUAC
- Length
- 16 nucleotides
- Bulged bases
- 8V84|1|1|U|2453, 8V84|1|1|U|2460
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V84_064 not in the Motif Atlas
- Geometric match to IL_4P3T_002
- Geometric discrepancy: 0.2915
- The information below is about IL_4P3T_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01472.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
8V84|1|1|G|2452
8V84|1|1|U|2453
8V84|1|1|G|2454
8V84|1|1|U|2455
8V84|1|1|A|2456
8V84|1|1|G|2457
8V84|1|1|A|2458
8V84|1|1|A|2459
8V84|1|1|U|2460
8V84|1|1|A|2461
8V84|1|1|A|2462
8V84|1|1|G|2463
*
8V84|1|1|C|2492
8V84|1|1|U|2493
8V84|1|1|A|2494
8V84|1|1|C|2495
Current chains
- Chain 1
- Saccharomyces cerevisiae 25S ribosomal RNA
Nearby chains
- Chain 3
- ATP-dependent RNA helicase DBP10
- Chain a
- Large ribosomal subunit protein uL1A
- Chain q
- 25S rRNA (cytosine(2870)-C(5))-methyltransferase
Coloring options: