IL_8V84_083

3D structure

PDB id

8V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACG*UUGU

Length

7 nucleotides

Bulged bases

8V84|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V84_083 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.3063

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8V84|1|1|A|3323
8V84|1|1|C|3324
8V84|1|1|G|3325
*
8V84|1|1|U|3381
8V84|1|1|U|3382
8V84|1|1|G|3383
8V84|1|1|U|3384

Current chains

Chain 1

Saccharomyces cerevisiae 25S ribosomal RNA

Nearby chains

Chain B

Large ribosomal subunit protein uL3

Chain Z

Ribosome biogenesis protein SSF1