IL_8V87_027

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUGAAG*UGGAGGC

Length

13 nucleotides

Bulged bases

8V87|1|1|G|860

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_027 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2732

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8V87|1|1|G|833
8V87|1|1|U|834
8V87|1|1|G|835
8V87|1|1|A|836
8V87|1|1|A|837
8V87|1|1|G|838
*
8V87|1|1|U|855
8V87|1|1|G|856
8V87|1|1|G|857
8V87|1|1|A|858
8V87|1|1|G|859
8V87|1|1|G|860
8V87|1|1|C|861

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 8

Nucleolar complex protein 2

Chain R

60S ribosomal protein L19-A