IL_8V87_052

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GAUA*UGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_052 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.232

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

8V87|1|1|G|1618
8V87|1|1|A|1619
8V87|1|1|U|1620
8V87|1|1|A|1621
*
8V87|1|1|U|1824
8V87|1|1|G|1825
8V87|1|1|C|1826

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38

Chain n

Pescadillo homolog