IL_8V87_069

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8V87|1|1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_069 not in the Motif Atlas

Geometric match to IL_4R4V_003

Geometric discrepancy: 0.2246

The information below is about IL_4R4V_003

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8V87|1|1|G|2412
8V87|1|1|A|2413
*
8V87|1|1|U|2807
8V87|1|1|A|2808
8V87|1|1|C|2809

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain J

rRNA-processing protein EBP2

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2