IL_8V87_083
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CCG*CAGG
- Length
- 7 nucleotides
- Bulged bases
- 8V87|1|1|A|2971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V87_083 not in the Motif Atlas
- Geometric match to IL_1L9A_007
- Geometric discrepancy: 0.1455
- The information below is about IL_1L9A_007
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_86319.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 269
Unit IDs
8V87|1|1|C|2959
8V87|1|1|C|2960
8V87|1|1|G|2961
*
8V87|1|1|C|2970
8V87|1|1|A|2971
8V87|1|1|G|2972
8V87|1|1|G|2973
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 7
- 60S ribosomal subunit assembly/export protein LOC1
- Chain l
- 60S ribosome subunit biogenesis protein NIP7
- Chain w
- 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase
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