IL_8V87_088

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

8V87|1|1|U|3056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_088 not in the Motif Atlas

Geometric match to IL_4V88_390

Geometric discrepancy: 0.3264

The information below is about IL_4V88_390

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87517.1

Basepair signature

cWW-L-R-L-R-tHS-L-cWW

Number of instances in this motif group

2

Unit IDs

8V87|1|1|U|3054
8V87|1|1|U|3055
8V87|1|1|U|3056
8V87|1|1|U|3057
8V87|1|1|U|3058
8V87|1|1|G|3059
*
8V87|1|1|C|3084
8V87|1|1|G|3085
8V87|1|1|A|3086
8V87|1|1|A|3087
8V87|1|1|G|3088

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain u

Ribosome biogenesis protein RLP24