IL_8V87_094
3D structure
- PDB id
- 8V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UACGAAUAAG*CGCUGAA
- Length
- 17 nucleotides
- Bulged bases
- 8V87|1|1|A|3180, 8V87|1|1|A|3186, 8V87|1|1|U|3207, 8V87|1|1|A|3209
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V87_094 not in the Motif Atlas
- Geometric match to IL_5TBW_124
- Geometric discrepancy: 0.0724
- The information below is about IL_5TBW_124
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_15174.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-cSS-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8V87|1|1|U|3179
8V87|1|1|A|3180
8V87|1|1|C|3181
8V87|1|1|G|3182
8V87|1|1|A|3183
8V87|1|1|A|3184
8V87|1|1|U|3185
8V87|1|1|A|3186
8V87|1|1|A|3187
8V87|1|1|G|3188
*
8V87|1|1|C|3204
8V87|1|1|G|3205
8V87|1|1|C|3206
8V87|1|1|U|3207
8V87|1|1|G|3208
8V87|1|1|A|3209
8V87|1|1|A|3210
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain H
- Large ribosomal subunit protein uL6A
- Chain M
- 60S ribosomal protein L14-A
- Chain O
- Large ribosomal subunit protein uL13A
- Chain S
- Large ribosomal subunit protein eL20A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: