IL_8V87_105

3D structure

PDB id

8V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V87_105 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.4212

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8V87|1|1|A|3342
8V87|1|1|G|3343
8V87|1|1|A|3344
8V87|1|1|G|3345
*
8V87|1|1|C|3360
8V87|1|1|G|3361
8V87|1|1|A|3362
8V87|1|1|U|3363

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 3

ATP-dependent RNA helicase DBP10