IL_8V9J_125
3D structure
- PDB id
- 8V9J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9J_125 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1088
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8V9J|1|B|C|72
8V9J|1|B|G|73
8V9J|1|B|A|74
8V9J|1|B|U|75
8V9J|1|B|G|76
8V9J|1|B|A|77
8V9J|1|B|U|78
8V9J|1|B|A|79
8V9J|1|B|C|80
*
8V9J|1|B|G|95
8V9J|1|B|A|96
8V9J|1|B|A|97
8V9J|1|B|A|98
8V9J|1|B|A|99
8V9J|1|B|G|100
8V9J|1|B|U|101
8V9J|1|B|A|102
8V9J|1|B|G|103
Current chains
- Chain B
- 5S Ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S Ribosomal Protein L16
- Chain X
- 50S ribosomal protein L25
Coloring options: