IL_8V9J_136

3D structure

PDB id

8V9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) (Structure 4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

8V9J|1|a|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9J_136 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.141

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8V9J|1|a|G|144
8V9J|1|a|G|145
8V9J|1|a|A|146
8V9J|1|a|U|147
8V9J|1|a|A|148
8V9J|1|a|A|149
8V9J|1|a|G|150
*
8V9J|1|a|U|165
8V9J|1|a|C|166
8V9J|1|a|U|167
8V9J|1|a|A|168
8V9J|1|a|A|169
8V9J|1|a|U|170
8V9J|1|a|A|171
8V9J|1|a|C|172

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20