IL_8V9K_015

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_015 not in the Motif Atlas

Homologous match to IL_5J7L_256

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8V9K|1|A|A|623
8V9K|1|A|G|624
8V9K|1|A|A|625
8V9K|1|A|G|626
*
8V9K|1|A|U|646
8V9K|1|A|G|647
8V9K|1|A|A|648
8V9K|1|A|U|649

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL13

Chain S

Large ribosomal subunit protein bL20