IL_8V9K_040

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8V9K|1|A|C|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_040 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3733

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

8V9K|1|A|G|1129
8V9K|1|A|C|1130
8V9K|1|A|G|1131
*
8V9K|1|A|C|1268
8V9K|1|A|C|1269

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL13

Chain S

Large ribosomal subunit protein bL20