IL_8V9K_041
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAGUG*CUCAAG
- Length
- 13 nucleotides
- Bulged bases
- 8V9K|1|A|C|1260, 8V9K|1|A|A|1262
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_041 not in the Motif Atlas
- Homologous match to IL_7RQB_039
- Geometric discrepancy: 0.1135
- The information below is about IL_7RQB_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.3
- Basepair signature
- cWW-cSH-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
8V9K|1|A|C|1136
8V9K|1|A|U|1137
8V9K|1|A|A|1138
8V9K|1|A|A|1139
8V9K|1|A|G|1140
8V9K|1|A|U|1141
8V9K|1|A|G|1142
*
8V9K|1|A|C|1258
8V9K|1|A|U|1259
8V9K|1|A|C|1260
8V9K|1|A|A|1261
8V9K|1|A|A|1262
8V9K|1|A|G|1263
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain 8
- 50S ribosomal protein L36
- Chain G
- 50S ribosomal protein L6
- Chain L
- Large ribosomal subunit protein uL13
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