IL_8V9K_132

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCGAA*UGG

Length

8 nucleotides

Bulged bases

8V9K|1|a|G|68, 8V9K|1|a|A|69

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_132 not in the Motif Atlas

Geometric match to IL_7RQB_045

Geometric discrepancy: 0.2999

The information below is about IL_7RQB_045

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

8V9K|1|a|U|66
8V9K|1|a|C|67
8V9K|1|a|G|68
8V9K|1|a|A|69
8V9K|1|a|A|70
*
8V9K|1|a|U|99
8V9K|1|a|G|100
8V9K|1|a|G|101

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20