IL_8V9K_144

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUGACGG*UUGUAAAC

Length

17 nucleotides

Bulged bases

8V9K|1|a|U|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_144 not in the Motif Atlas

Homologous match to IL_6CZR_129

Geometric discrepancy: 0.3306

The information below is about IL_6CZR_129

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58819.1

Basepair signature

cWW-L-R-tWH-R-L-tHW-tSS-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

8V9K|1|a|G|409
8V9K|1|a|G|410
8V9K|1|a|A|411
8V9K|1|a|U|412
8V9K|1|a|G|413
8V9K|1|a|A|414
8V9K|1|a|C|415
8V9K|1|a|G|416
8V9K|1|a|G|417
*
8V9K|1|a|U|426
8V9K|1|a|U|427
8V9K|1|a|G|428
8V9K|1|a|U|429
8V9K|1|a|A|430
8V9K|1|a|A|431
8V9K|1|a|A|432
8V9K|1|a|C|433

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4