IL_8V9K_154
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGAAAAC*GCGUG
- Length
- 12 nucleotides
- Bulged bases
- 8V9K|1|a|U|612
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_154 not in the Motif Atlas
- Geometric match to IL_8C3A_433
- Geometric discrepancy: 0.376
- The information below is about IL_8C3A_433
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_83023.1
- Basepair signature
- cWW-R-L-R-L-R-L-L-L-L
- Number of instances in this motif group
- 1
Unit IDs
8V9K|1|a|U|585
8V9K|1|a|G|586
8V9K|1|a|A|587
8V9K|1|a|A|588
8V9K|1|a|A|589
8V9K|1|a|A|590
8V9K|1|a|C|591
*
8V9K|1|a|G|609
8V9K|1|a|C|610
8V9K|1|a|G|611
8V9K|1|a|U|612
8V9K|1|a|G|613
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain d
- 30S ribosomal protein S4
- Chain h
- Small ribosomal subunit protein uS8
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
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