IL_8V9K_202
3D structure
- PDB id
- 8V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UGCAUGG*UCAUCAUG
- Length
- 15 nucleotides
- Bulged bases
- 8V9K|1|a|C|1034, 8V9K|1|a|A|1182
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9K_202 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.207
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8V9K|1|a|U|1032
8V9K|1|a|G|1033
8V9K|1|a|C|1034
8V9K|1|a|A|1035
8V9K|1|a|U|1036
8V9K|1|a|G|1037
8V9K|1|a|G|1038
*
8V9K|1|a|U|1180
8V9K|1|a|C|1181
8V9K|1|a|A|1182
8V9K|1|a|U|1183
8V9K|1|a|C|1184
8V9K|1|a|A|1185
8V9K|1|a|U|1186
8V9K|1|a|G|1187
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain j
- 30S ribosomal protein S10
- Chain n
- Small ribosomal subunit protein uS14B
Coloring options: