IL_8V9K_203

3D structure

PDB id

8V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Rv2629 (Balon) (Structure 5)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9K_203 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.3305

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8V9K|1|a|C|1240
8V9K|1|a|G|1241
8V9K|1|a|A|1242
8V9K|1|a|U|1243
8V9K|1|a|G|1244
*
8V9K|1|a|U|1253
8V9K|1|a|G|1254
8V9K|1|a|G|1255
8V9K|1|a|A|1256
8V9K|1|a|G|1257

Current chains

Chain a

16S Ribosomal RNA

Nearby chains