IL_8V9L_040

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCCUAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_040 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.114

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

8V9L|1|A|C|1122
8V9L|1|A|C|1123
8V9L|1|A|C|1124
8V9L|1|A|C|1125
8V9L|1|A|U|1126
8V9L|1|A|A|1127
8V9L|1|A|A|1128
8V9L|1|A|G|1129
*
8V9L|1|A|C|1269
8V9L|1|A|G|1270

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL13

Chain S

Large ribosomal subunit protein bL20