IL_8V9L_047

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUG*CACC

Length

8 nucleotides

Bulged bases

8V9L|1|A|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_047 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.2026

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8V9L|1|A|G|1177
8V9L|1|A|U|1178
8V9L|1|A|U|1179
8V9L|1|A|G|1180
*
8V9L|1|A|C|1194
8V9L|1|A|A|1195
8V9L|1|A|C|1196
8V9L|1|A|C|1197

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L11

Chain O

Large ribosomal subunit protein uL16

Chain X

50S ribosomal protein L25