IL_8V9L_050

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8V9L|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_050 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1289

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8V9L|1|A|C|1322
8V9L|1|A|G|1323
8V9L|1|A|G|1324
8V9L|1|A|U|1325
8V9L|1|A|G|1326
8V9L|1|A|A|1327
8V9L|1|A|A|1328
8V9L|1|A|G|1329
*
8V9L|1|A|U|1349
8V9L|1|A|G|1350
8V9L|1|A|G|1351
8V9L|1|A|A|1352
8V9L|1|A|G|1353

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain S

Large ribosomal subunit protein bL20