3D structure

PDB id
8V9L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
CUC*GGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8V9L_093 not in the Motif Atlas
Geometric match to IL_6IA2_005
Geometric discrepancy: 0.12
The information below is about IL_6IA2_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

8V9L|1|A|C|2320
8V9L|1|A|U|2321
8V9L|1|A|C|2322
*
8V9L|1|A|G|2413
8V9L|1|A|G|2414
8V9L|1|A|G|2415

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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