IL_8V9L_111
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- UUGAG*CAAGACCAG
- Length
- 14 nucleotides
- Bulged bases
- 8V9L|1|A|C|3004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9L_111 not in the Motif Atlas
- Homologous match to IL_7RQB_102
- Geometric discrepancy: 0.1359
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8V9L|1|A|U|2860
8V9L|1|A|U|2861
8V9L|1|A|G|2862
8V9L|1|A|A|2863
8V9L|1|A|G|2864
*
8V9L|1|A|C|2998
8V9L|1|A|A|2999
8V9L|1|A|A|3000
8V9L|1|A|G|3001
8V9L|1|A|A|3002
8V9L|1|A|C|3003
8V9L|1|A|C|3004
8V9L|1|A|A|3005
8V9L|1|A|G|3006
Current chains
- Chain A
- 23S Ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain L
- Large ribosomal subunit protein uL13
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