IL_8V9L_112

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_112 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.092

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8V9L|1|A|C|2876
8V9L|1|A|U|2877
8V9L|1|A|A|2878
8V9L|1|A|G|2879
8V9L|1|A|U|2880
8V9L|1|A|A|2881
8V9L|1|A|C|2882
*
8V9L|1|A|G|2887
8V9L|1|A|G|2888
8V9L|1|A|A|2889
8V9L|1|A|C|2890
8V9L|1|A|C|2891
8V9L|1|A|G|2892

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain x

Elongation factor Tu