IL_8V9L_153

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GU*AUAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_153 not in the Motif Atlas

Homologous match to IL_4LFB_025

Geometric discrepancy: 0.0917

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

29

Unit IDs

8V9L|1|a|G|577
8V9L|1|a|U|578
*
8V9L|1|a|A|620
8V9L|1|a|U|621
8V9L|1|a|A|622
8V9L|1|a|C|623

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain h

Small ribosomal subunit protein uS8

Chain q

30S ribosomal protein S17