IL_8V9L_157

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

8V9L|1|a|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_157 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1005

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8V9L|1|a|C|642
8V9L|1|a|A|643
8V9L|1|a|G|644
8V9L|1|a|G|645
8V9L|1|a|G|646
*
8V9L|1|a|U|720
8V9L|1|a|G|721
8V9L|1|a|G|722
8V9L|1|a|G|723

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain o

Small ribosomal subunit protein uS15

Chain r

Small ribosomal subunit protein bS18B