IL_8V9L_175
3D structure
- PDB id
- 8V9L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUGC*GGACUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8V9L_175 not in the Motif Atlas
- Geometric match to IL_5J7L_051
- Geometric discrepancy: 0.3502
- The information below is about IL_5J7L_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8V9L|1|a|G|1104
8V9L|1|a|U|1105
8V9L|1|a|U|1106
8V9L|1|a|G|1107
8V9L|1|a|C|1108
*
8V9L|1|a|G|1125
8V9L|1|a|G|1126
8V9L|1|a|A|1127
8V9L|1|a|C|1128
8V9L|1|a|U|1129
8V9L|1|a|C|1130
Current chains
- Chain a
- 16S Ribosomal RNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
Coloring options: