IL_8V9L_182

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8V9L|1|a|C|1383, 8V9L|1|a|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_182 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2057

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8V9L|1|a|C|1382
8V9L|1|a|C|1383
8V9L|1|a|G|1384
*
8V9L|1|a|C|1485
8V9L|1|a|A|1486
8V9L|1|a|A|1487
8V9L|1|a|G|1488

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain u

30S Ribosomal Protein S22

Chain v

poly-U mRNA