IL_8V9L_196

3D structure

PDB id

8V9L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Mycobacterium smegmatis 70S ribosome in complex with hibernation factor Msmeg1130 (Balon) and MsmegEF-Tu(GDP) (Composite structure 6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8V9L_196 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0669

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8V9L|1|A|G|1884
8V9L|1|A|G|1885
8V9L|1|A|A|1886
8V9L|1|A|A|1887
8V9L|1|A|C|1888
8V9L|1|A|U|1889
8V9L|1|A|C|1890
8V9L|1|A|G|1891
8V9L|1|A|G|1892
*
8V9L|1|A|C|2214
8V9L|1|A|U|2215
8V9L|1|A|G|2216
8V9L|1|A|U|2217
8V9L|1|A|C|2218

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain M

50S ribosomal protein L14