IL_8VFT_025

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8VFT|1|5|C|481|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_025 not in the Motif Atlas

Geometric match to IL_8F5G_002

Geometric discrepancy: 0.2035

The information below is about IL_8F5G_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8VFT|1|5|G|481
8VFT|1|5|C|481|||A
8VFT|1|5|G|482
*
8VFT|1|5|C|672
8VFT|1|5|C|673

Current chains

Chain 5

28S rRNA

Nearby chains

Chain r

eL28