IL_8VFT_033

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8VFT|1|5|A|943, 8VFT|1|5|A|944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_033 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2056

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VFT|1|5|A|723
8VFT|1|5|C|724
*
8VFT|1|5|G|942
8VFT|1|5|A|943
8VFT|1|5|A|944
8VFT|1|5|U|945

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain F

uL30