IL_8VFT_036

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

8VFT|1|5|C|738, 8VFT|1|5|C|738|||A, 8VFT|1|5|C|924, 8VFT|1|5|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_036 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.2751

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8VFT|1|5|C|737
8VFT|1|5|C|738
8VFT|1|5|C|738|||A
8VFT|1|5|G|739
*
8VFT|1|5|C|923
8VFT|1|5|C|924
8VFT|1|5|C|925
8VFT|1|5|G|926

Current chains

Chain 5

28S rRNA

Nearby chains

Chain M

eL14