IL_8VFT_047

3D structure

PDB id

8VFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translating 80S rabbit ribosome stalled by emetine with eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

8VFT|1|5|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8VFT_047 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1899

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8VFT|1|5|G|1360
8VFT|1|5|G|1361
*
8VFT|1|5|C|1376
8VFT|1|5|G|1377
8VFT|1|5|C|1378
8VFT|1|5|C|1379

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain L

eL13

Chain N

eL15

Chain a

uL15